maps spectral species based on PCA file computed previously

map_spectral_species(Input_Image_File, Output_Dir, PCA_Files, PCA_model,
  SpectralFilter, Input_Mask_File, Pix_Per_Partition, nb_partitions,
  Continuum_Removal = TRUE, TypePCA = "SPCA", nbclusters = 50,
  nbCPU = 1, MaxRAM = FALSE)

Arguments

Input_Image_File

character. Path of the image to be processed

Output_Dir

character. Path for output directory

PCA_Files

character. Path of the PCA image

PCA_model

list. Parameters for teh PCA model to be applied on original image

SpectralFilter

list. information about spectral band location (central wavelength), bands to keep...

Input_Mask_File

character. Path of the mask corresponding to the image

Pix_Per_Partition

numeric. number of pixels for each partition

nb_partitions

numeric. number of partition

Continuum_Removal

boolean. Set to TRUE if continuum removal should be applied

TypePCA

character. Type of PCA: choose either "PCA" or "SPCA"

nbclusters

numeric. number of clusters defined in k-Means

nbCPU

numeric. Number of CPUs to use in parallel.

MaxRAM

numeric. MaxRAM maximum size of chunk in GB to limit RAM allocation when reading image file.

Value

None