gets alpha diversity indicators from plot

diversity_from_plots(
  Raster_SpectralSpecies,
  Plots,
  nbclusters = 50,
  Raster_Functional = FALSE,
  Selected_Features = FALSE,
  Name_Plot = FALSE,
  Hellinger = FALSE,
  pcelim = 0.02,
  FDmetric = c("FRic", "FEve", "FDiv")
)

Arguments

Raster_SpectralSpecies: character. path for the SpectralSpecies file computed from DiverstyMapping method
Plots: list. list of paths corresponding to shapefiles defining polygons in the raster
nbclusters: numeric. Number of clusters defined in k-Means.
Raster_Functional: character. path for the raster file used to compute functional diversity
Selected_Features: numeric. selected features for Raster_Functional. use all features if set to FALSE
Name_Plot: character. Name of the plots defined in the shapefiles
Hellinger: boolean. set TRUE to compute Hellinger distance matrices based on Euclidean distances
pcelim: numeric. Discard spectral species when contribution is < pcelim (between 0 and 1)
FDmetric: character. Functional diversity metric

Value

alpha and beta diversity metrics