gets alpha diversity indicators from plot

diversity_from_plots(
  Raster_SpectralSpecies,
  Plots,
  nbclusters = 50,
  Raster_Functional = FALSE,
  Selected_Features = FALSE,
  Name_Plot = FALSE,
  Hellinger = FALSE,
  pcelim = 0.02,
  FDmetric = c("FRic", "FEve", "FDiv")
)

Arguments

Raster_SpectralSpecies

character. path for the SpectralSpecies file computed from DiverstyMapping method

Plots

list. list of paths corresponding to shapefiles defining polygons in the raster

nbclusters

numeric. Number of clusters defined in k-Means.

Raster_Functional

character. path for the raster file used to compute functional diversity

Selected_Features

numeric. selected features for Raster_Functional. use all features if set to FALSE

Name_Plot

character. Name of the plots defined in the shapefiles

Hellinger

boolean. set TRUE to compute Hellinger distance matrices based on Euclidean distances

pcelim

numeric. Discard spectral species when contribution is < pcelim (between 0 and 1)

FDmetric

character. Functional diversity metric

Value

alpha and beta diversity metrics