computes diversity metrics from raster

Source: R/spectral_species_full_tiles.R

computes diversity metrics from raster

spectral_species_full_tiles(
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  plots,
  nbCPU = 1,
  site_name = NULL,
  overwrite = TRUE,
  options = NULL
)

Arguments

feature_dir

character. path where to get features

list_features

character. list of features

mask_dir

character. path for masks

output_dir

character. path where to save results

plots

list. list of sf plots

nbCPU

numeric. Number of CPUs available

site_name

character. name for the output files

overwrite

boolean.

options

list. including

  • nb_clusters numeric. number of clusters

  • nb_samples_alpha numeric. number of samples to compute alpha diversity

  • mosaic_output boolean. set TRUE if outputs need to be mosaiced

  • weightIQR numeric. IQR applied to filter out features to be used

Value

mosaic_path