R/run_biodivMapR.R
run_biodivMapR.Rd
apply biodivMapR to an individual set of rasters (one site)
run_biodivMapR(
input_raster_path,
input_mask_path = NULL,
Kmeans_info,
Beta_info,
output_dir,
output_raster_name,
SelectBands = NULL,
window_size,
alphametrics = "shannon",
Hill_order = 1,
FDmetric = NULL,
pcelim = 0.02,
maxRows = NULL,
nbCPU = 1,
MinSun = 0.25,
filetype = "GTiff",
MovingWindow = F
)
character.
directory where spectral indices are for each plot
list. kmeans description obtained from function get_kmeans
list. BC dissimilarity & associated beta metrics from training set
path where to save outputs
raster file names
numeric. bands selected from input data
numeric. window size for square plots
list. alpha diversity metrics: richness, shannon, simpson
numeric. Hill order
character. list of functional metrics
numeric. minimum proportion of pixels to consider spectral species
numeric. maximum number or rows to process
numeric. Number of CPUs available
numeric. minimum proportion of sunlit pixels
character. gdal driver name
boolean. should process be moving window (much longer)
none