computes diversity metrics from raster

computes diversity metrics from raster

biodivMapR_tiles(
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  window_size,
  plots,
  alphametrics = "shannon",
  Hill_order = 1,
  FDmetric = NULL,
  nbCPU = 1,
  pcelim = 0.02,
  maxRows = 1200,
  moving_window = FALSE,
  siteName = NULL,
  mosaic_output = TRUE
)

Arguments

feature_dir

character. path where to get features

list_features

character. list of features

mask_dir

character. path for masks

output_dir

character. path where to save results

window_size

numeric. number of clusters used in kmeans

plots

list. list of sf plots

alphametrics

character.

Hill_order

numeric.

FDmetric

character.

nbCPU

numeric. Number of CPUs available

pcelim

numeric. minimum proportion of pixels to consider spectral species

maxRows

numeric. maximum number of rows

moving_window

boolean. should moving window be used?

siteName

character. name for the output files

mosaic_output

boolean. set TRUE if outputs need to be mosaiced

Value

mosaic_path