computes diversity metrics from raster

Source: R/biodivMapR_full_tiles.R

computes diversity metrics from raster

biodivMapR_full_tiles(
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  window_size,
  plots,
  nbCPU = 1,
  site_name = NULL,
  options = NULL
)

Arguments

feature_dir

character. path where to get features

list_features

character. list of features

mask_dir

character. path for masks

output_dir

character. path where to save results

window_size

numeric. number of clusters used in kmeans

plots

list. list of sf plots

nbCPU

numeric. Number of CPUs available

site_name

character. name for the output files

options

list. including

  • nb_clusters numeric. number of clusters

  • nb_samples_alpha numeric. number of samples to compute alpha diversity

  • nb_samples_beta numeric. number of samples to compute beta diversity

  • alpha_metrics character.

  • Hill_order numeric.

  • fd_metrics character.

  • nb_iter numeric. Number of iterations required to compute diversity

  • pcelim numeric. minimum proportion of pixels to consider spectral species

  • maxRows numeric. maximum number of rows

  • moving_window boolean. should moving window be used?

  • mosaic_output boolean. set TRUE if outputs need to be mosaiced

  • weightIRQ numeric. IQR applied to filter out features to be used

Value

mosaic_path