computes diversity metrics from raster

Source: R/biodivMapR_full_tiles.R

computes diversity metrics from raster

biodivMapR_full_tiles(
  dsn_grid,
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  window_size,
  plots,
  nb_clusters = 50,
  nb_samples_alpha = 1e+05,
  nb_samples_beta = 2000,
  alphametrics = "shannon",
  Hill_order = 1,
  FDmetric = NULL,
  nbCPU = 1,
  nb_iter = 10,
  pcelim = 0.02,
  maxRows = 1200,
  moving_window = FALSE,
  siteName = NULL
)

Arguments

dsn_grid

character. path for the tiling grid

feature_dir

character. path where to get features

list_features

character. list of features

mask_dir

character. path for masks

output_dir

character. path where to save results

window_size

numeric. number of clusters used in kmeans

plots

list. list of sf plots

nb_clusters

numeric. number of clusters

nb_samples_alpha

numeric. number of samples to compute alpha diversity

nb_samples_beta

numeric. number of samples to compute beta diversity

alphametrics

character.

Hill_order

numeric.

FDmetric

character.

nbCPU

numeric. Number of CPUs available

nb_iter

numeric. Number of iterations required to compute diversity

pcelim

numeric. minimum proportion of pixels to consider spectral species

maxRows

numeric. maximum number of rows

moving_window

boolean. should moving window be used?

siteName

character. name for the output files

Value

mosaic_path