computes diversity metrics from raster

Source: R/biodivMapR_full_tiles.R

computes diversity metrics from raster

biodivMapR_full_tiles(
  dsn_grid,
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  window_size,
  plots,
  nbsamples_alpha = 1e+05,
  nbsamples_beta = 2000,
  nbCPU = 1,
  pcelim = 0.02,
  maxRows = 1200,
  MovingWindow = F,
  siteName = NULL
)

Arguments

dsn_grid

character. path for the tiling grid

feature_dir

character. path where to get features

list_features

character. list of features

mask_dir

character. path for masks

output_dir

character. path where to save results

window_size

numeric. number of clusters used in kmeans

plots

list. list of sf plots

nbsamples_alpha

numeric. number of samples to compute beta diversity from

nbsamples_beta

numeric. number of samples to compute beta diversity from

nbCPU

numeric. Number of CPUs available

pcelim

numeric. minimum proportion of pixels to consider spectral species

maxRows

numeric. maximum number of rows

MovingWindow

boolean. should moving window be used?

siteName

character. name for the output files

Value

mosaic_path