compute alpha metrics from list of spectral species distributions in the context of sequential feature selection

Source: R/alpha_metrics_sfs.R

compute alpha metrics from list of spectral species distributions in the context of sequential feature selection

alpha_metrics_sfs(
  alpha_metrics,
  obs2optimize,
  SSValid,
  corrMethod,
  nb_clusters,
  Hill_order = 1,
  pcelim,
  nbPlots_total
)

Arguments

alpha_metrics

character. names of alpha diversity metrics to compute

obs2optimize

list. reference value for alpha diversity metrics

SSValid

numeric.

corrMethod

character. 'pearson' or 'spearman'

nb_clusters

numeric. number of clusters

Hill_order

numeric. hill order if hill index to be computed

pcelim

numeric. threshold value of relative abundance to keep

nbPlots_total

numeric. total number of plots in corresponding to SSValid

Value

list. assessed value and correlation with obs2optimize values